For our Disneyland trip this year, we stayed at the Stanford Inn & Suites Anaheim. It was a 3 night stay, and all I can say is we will definitely be back! The staff was friendly, the rooms were nice and clean. We got the 2 room suite, first room had 2 queen beds, and the other 1 twin bunk bed, each with their own bathroom! Easily fits 6 people comfortably.
The kids really enjoyed the heated pool, it was clean and well kept. The pool area has a shower, restroom some table and long chairs.
Your stay does come with free continental breakfast, hours are from 6:30pm - 9:30pm which include Fresh Waffles, Bagels, Muffins and Toast, as well as Scrambled eggs, Sausage and Oatmeal. For the beverages, they have orange juice, apple juice, water, and coffee.
They do charge for parking, and if you plan to foot it, It's about a 25 min walk to the park gates. However, The Toy Story Parking Lot is about a block down, or you can drive to the Disneyland Parking Garage, which charges $35 all day parking and shuttle access.
So if your looking for something clean, affordable near the Disneyland Resort this is it here.